Full Stack Bioinformatics Scientist (Animal Genomics)

Scismic is supporting the growth of a fast-growing biotech startup focusing on animal genomics. They are seeking a Bioinformatics Scientist to transform raw sequencing data into high-impact biological insights.

What You’ll Do

• Pipeline Architecture:

Build and manage end-to-end WGS and low-pass sequencing pipelines (QC, alignment, variant calling, and annotation).

• Genomic Dataset Development:

Construct and refine species-specific genotype datasets, starting with equine and expanding across multiple large animal models.

• Statistical Analysis:

Lead association studies (GWAS) and population genetics analyses to identify actionable genetic targets.

• Reproducible Science:

Maintain scalable, containerized workflows using Nextflow or Snakemake within cloud environments.

• Predictive Modeling:

Develop custom ML/AI frameworks to support trait modeling, animal valuation, and performance forecasting.

Who You Are

• Technical Expert:

Strong background in NGS data analysis, specifically whole-genome sequencing (WGS) and variant discovery.

• Coder:

Proficient in Python and/or R, with deep comfort in Linux, HPC, or cloud computing (AWS/GCP).

• Workflow Driven:

Experience using Docker and workflow languages (WDL/Nextflow) to ensure reproducible results.

• Analytically Minded:

You enjoy the challenge of imputation, polygenic risk scores (PRS), and translating complex data into clear recommendations.

Preferred Experience

• Direct experience in large animal genomics (equine, bovine, or porcine).
• Background in population genetics or agricultural genomics.
• Familiarity with building data products in a startup or rapid-growth setting.